rs47445436 SNP Detail

Summary

• ID
  rs47445436
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135762311 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ACTCTGGTC TACCTCCCTG CTCTGCTGCT
  GCGGTGGCCT GGGGACATCC TGCCTGTCAT CGTGTGGGTA TCCAGTGTGC ACCAGCCCGT
  GTACTTCTTC AGATCATCAC ACTTCTGATT TTCTGCCTAT CTGCCTAGGC CTGGTTATTT
  K
  TAACGACCAG ACCTCTAAGT TGCTTCTGGA GTCATCTTGC TATGCACCAG TGTGGCTGCC
  AAGAAGTGGC TGTCTGGATA AAGTCCCACA CCTAAGATGC TCAGAACCCA TTGGTTTTCT
  AGGAGGAGGG TGCTCTGTGT GGATAGATGC                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	SM/J
ss60803394	NES16472598	PERLEGEN	MM_PANEL2	f	SNP		T	G			T
ss145547935	ENSMUSSNP4640487	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T		G
ss319993814	CHEV_1_137731150	CHEVERUD	SCREENING_POP	f	SNP					G		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	SM/J
rs47445436					SNP	G	T	G	G	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60803394	NES16472598	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135762311 () rs orientation: forward

Symbol	Name	Function Class
Lad1	ladinin	1232 bp downstream
Rr419292	regulatory region 419292	within coordinates
Rr419293	regulatory region 419293	146 bp distal
Rr419294	regulatory region 419294	1291 bp proximal
Rr419295	regulatory region 419295	1851 bp proximal
Tnnt2	troponin T2, cardiac	1781 bp upstream
Tssr9005	transcription start site region 9005	1807 bp upstream