rs47446162 SNP Detail

Summary

• ID
  rs47446162
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:3648258 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCGCGAGGC TGACCTGAAA
  CACCAGCCAA TTCTCATGGT AGGCTCTGCT CCTGACCTAT GAAGCCCTGC CTACCAGGCT
  TGGCTCCTCC CCTTTGCACT TTCCTGCAAA GTTTCTAGCT TGTGCTTGAA CCTCCCTTCA
  GGCTCTACCC ACTAATTCTC GTTACACTCC CCAAATGGTT CCTCTAGCCA TGCCCTCAAG
  S
  TCAGCCCATT AGGTGTAGCT CCTCCAACCA GTTTTAGCCC CTCCCACAAA GCTTAGCTCC
  CCCTATCAAG CCTACCTCCA TTTTCCAAGC CTAGCTTTTC CATCAAGCTA AGGGTGTCAC
  ACTCAGTTCT GCAGATCATA CCTGGCTCCT CCCTCAAGTT GCTATACCCT TCCACTCCTC
  AGGTTCCTCC AGTTCTGGCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61076720	NES16055128	PERLEGEN	MM_PANEL2	f	SNP	G	C	C	C	C	C	C	C	C	C	C	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47446162					SNP	G	C	C	C	C	C	C	C	C	C	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61076720	NES16055128	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:3648258 () rs orientation: forward

Symbol	Name	Function Class
Camsap3	calmodulin regulated spectrin-associated protein family, member 3	Intron
Rr381636	regulatory region 381636	within coordinates
Rr658946	regulatory region 658946	1046 bp proximal
Tssr76064	transcription start site region 76064	1734 bp downstream
Tssr76065	transcription start site region 76065	57 bp upstream
Tssr76066	transcription start site region 76066	81 bp upstream
Tssr76067	transcription start site region 76067	96 bp upstream
Tssr76068	transcription start site region 76068	113 bp upstream
Tssr76069	transcription start site region 76069	185 bp upstream
Tssr76070	transcription start site region 76070	335 bp upstream
Tssr76071	transcription start site region 76071	384 bp upstream
Tssr76072	transcription start site region 76072	1263 bp upstream