rs47446659 SNP Detail

Summary

• ID
  rs47446659
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:122528881 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTTCCTAC CAGGTGGCCA
  TTTCCATATT ATGTATGGGA AGGGGGAGAA ATCTCAAGTA ATAAATCGAT TGCTTTAAAA
  AATAAAAAAT GTAGCAGGTC GTTGAATTAT TTAAGTGATC AGTTCTGGTA GACCACTAGC
  CATTCCGAGT CGTTTAGAGA AGGCGAGCAT TGGCAAATCA TGTTTAGACT CCAGAGCTGG
  Y
  GGGAGTCACA GCTGGGACGT GACTGCTGAG GGGGAAGCGG TTTGAAGGTA GAGTAGATGT
  CGGTTATCCT GTAAGAGGGT ATGAGGGACA GTCCGGCTGG GAAAGCAAGC TGCTAACAAT
  ACAGAAAGAA CGCTAGCCTT TTCCTCAACA TCTGAAATAA ATGACTAGCC TTTGAGGATG
  GTGGACTCTG GGAGGATGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52249030	NES15337111	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	T	C	C	C	C	C	C	C	C	T
ss147651273	ENSMUSSNP2458255	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47446659					SNP	T	T	C	C	C	T	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52249030	NES15337111	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:122528881 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2304	CpG island 2304	514 bp proximal
Ppm1h	protein phosphatase 1H (PP2C domain containing)	within coordinates
Rr226290	regulatory region 226290	within coordinates