rs47446874 SNP Detail

Summary

• ID
  rs47446874
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:6803088 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTAAAATT GAAACACAGC
  CACTATTAAG TCTAAAAGTG ACTGTTGACA AACATTTATT AGTTTCTTAC TAATAGAGCC
  AACAACTATT CTAAGAGCTT CATGTACATT TAGTGTACCT GGCCTCCCAA GAACCTTGTA
  ACTAATGGCC TGACACCACC CCTACTGTAG AGATAAAGAA ATGGAGATTC AGGAAGTTCA
  Y
  TGTTGAGCCA CCTGTCACTC AAAGAGCCTG TGTACTGGAC ACTCACTTCA GCATCATTAG
  AAATAGTAAC TTTGTAGAGA TTATTCCTAA TTTATGTGTA TGTAGGGATC TGAATATACC
  CATCAGATCC CCTGGAGCTG GAGTCAGAGG TGGGTTTGAG TCATCCCCTA CTCCTGATGC
  TGGGAACCAA ACTCAGTTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52588490	NES15680196	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47446874					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52588490	NES15680196	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:6803088 () rs orientation: forward

Symbol	Name	Function Class
Rbfox1	RNA binding protein, fox-1 homolog (C. elegans) 1	within coordinates
Rr511178	regulatory region 511178	767 bp proximal
Tssr136955	transcription start site region 136955	1475 bp upstream