rs47448692 SNP Detail

Summary

• ID
  rs47448692
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:40481793 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATAAACTG AAATCTCCAG
  AGGAAGGAGA AACTTAGAGA GATTAAAAAA GGAAATATTT TCCATGCAAA AATATGGAAA
  ACACGATAGA AGAAGGCATT TGGACCCCAT ATAGTTTTGT TTTGACTGTC AACATAAAAA
  TACTTATATG TTCAGTAGTG GTACAATTTT ATATATCCCT TTAAAGGAAG ATCAAAATAA
  Y
  GCAGACTTAG ATCAGGAGAG GACTGAGAGA TGGAACACTA GTTACAGGCC ATAGTACAGA
  GGTGAGAGGA TTCTTTAAAT CAGAATCACA GATCTTGAGA AGAACTCAAC CTGGATCCTA
  CAGTGACAGC AGAAAAGATA GTTCCAGATG AGAAAAATCC ACACAGGCTT GAGGAAGTAG
  ATGAGCAGCC CATAGAGATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61273413	NES16894499	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47448692					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61273413	NES16894499	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:40481793 () rs orientation: forward

Symbol	Name	Function Class
Rr214672	regulatory region 214672	393 bp distal
Rr222650	regulatory region 222650	423 bp distal
Slc22a16	solute carrier family 22 (organic cation transporter), member 16	1665 bp downstream