rs47449026 SNP Detail

Summary

• ID
  rs47449026
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:52226316 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTGTAAATTT CTGCCAGAAA TTTTACATAT GAATAAGTCC
  TTCCAACAAT AACTTGGATG TTTGAGAAAG CAGATAACAT AGTAGTTGTG AACTGAAATC
  S
  TAACTGTAAC TAAATATCCA TGACCCCTTC CCTCCGACAT TATAAATGAT TAAAACTTAA
  AGTGGAGAAC AGATAGACCT TTCACACAAA ATAATTATAA                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	NZW/LacJ	WSB/EiJ
ss60215430	NES15719027	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	G	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	NZW/LacJ	WSB/EiJ
rs47449026					SNP	C	C	C	G	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60215430	NES15719027	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:52226316 () rs orientation: forward

Symbol	Name	Function Class
Alcam	activated leukocyte cell adhesion molecule	within coordinates
Tssr141454	transcription start site region 141454	1515 bp upstream
Tssr141455	transcription start site region 141455	771 bp downstream
Tssr141456	transcription start site region 141456	1643 bp downstream
Tssr141457	transcription start site region 141457	1670 bp downstream
Tssr141458	transcription start site region 141458	1724 bp downstream
Tssr141459	transcription start site region 141459	1747 bp downstream
Tssr141460	transcription start site region 141460	1781 bp downstream
Tssr141461	transcription start site region 141461	1805 bp downstream
Tssr141462	transcription start site region 141462	1859 bp downstream