rs47449299 SNP Detail

Summary

• ID
  rs47449299
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30815370 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAGACGCAAG TGCATCCGGT CCCACCAGAA GCCAAGGGCC
  ACTAGTGTCA GACCCCAGAC CTGAGCCAGA TAAACAGCCC AGAAGGCCAT CTACACCCGC
  K
  TGTGGCCCCG CTGGCATCTG AGTCACGACA GCTGTCCGCA CACAGCAGGC TACCGGCTTG
  CCCTCTCTGC TGGTCCCTGT ACCTCTTCCA GCCACGGAC                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322139441	CHEV_7_31900964	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs47449299					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30815370 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18835	CpG island 18835	within coordinates
Hpn	hepsin	655 bp upstream
Rr645021	regulatory region 645021	674 bp distal
Rr645022	regulatory region 645022	165 bp distal
Rr645023	regulatory region 645023	651 bp proximal
Scn1b	sodium channel, voltage-gated, type I, beta	579 bp downstream
Tssr71932	transcription start site region 71932	1229 bp upstream
Tssr71933	transcription start site region 71933	637 bp upstream
Tssr71934	transcription start site region 71934	947 bp downstream