rs47450040 SNP Detail

Summary

• ID
  rs47450040
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:8687076 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTTTAAGG GTTTGTATAA
  AAACTGATAA ATATAAAAAG ACAAATGTTT ACCTATAAAC CATACATTAT AATCCATAGA
  CATAATATAG ATTCAGGAAG TGACTCCACC GTGACAGGAC GTGGCCATAC CATGACCAGA
  CATGAGAATA CTGGGATAGG AAGTGGCTGC ACAGTGACAG GAAGTGATTA TACCCTGACC
  R
  GAAGTGACCA TGTTGTCACA TGAAGCGACC ACACCATGAC CAGAAGGGAC TGGAAGTGAC
  CGTGTCGTCA CAGGAAGTGG CTACAGCATG ACCAGAAGTG ACCGTATCAT AACTGGAAGT
  GGCCGTAACA TCAGGATTTT CTTCCTGTTT TTGTTGTTTC TCAGCGTCGG TATGGTTTTG
  GAGTAGGCAA ACCTGCCTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61347601	NES16951222	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47450040					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61347601	NES16951222	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:8687076 () rs orientation: forward

Symbol	Name	Function Class
Gm56531	predicted gene, 56531	within coordinates
Rr403226	regulatory region 403226	1706 bp upstream
Tssr112727	transcription start site region 112727	188 bp upstream
Tssr115717	transcription start site region 115717	37 bp upstream