rs47450327 SNP Detail

Summary

• ID
  rs47450327
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:43130018 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTTTTACA GTTCTACAGC
  TAGAAGAAGC TGCCAGTGGA GCACAGTACC AACCTTTGTC TCTAGACAGT TTAGGCCAAA
  GCTGAATTGG CCGTGCAGGC TGCAAAAGCT CTGTCCCCAA CTTTAGGGCC AGAAGACTTC
  AACTCAGATA TGACAGGAGG AAGGAGAGCA GAGAAAATAA GGCCAGGAGT TGTGCCGAGT
  Y
  TTACCGATGA GCTGAACATG CACACCTTGC CATGCACAGT GAACTGAAAT CCAGAATCCA
  CAGCCTAACT CCACAGTAAG ACCTCCATGG GGTCAACGGT GGCTCAGGTC ACTGAACTAT
  GAATTTTCAG AGTCGAAGAG TGGCCTTAAC ACTCTCATTT TTATTAGTGA ACAATCACTT
  ACTGTATTTC TGTTAAGTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss149008203	ENSMUSSNP2314853	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs47450327					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:43130018 () rs orientation: forward

Symbol	Name	Function Class
8430432A02Rik	RIKEN cDNA 8430432A02 gene	1730 bp upstream
Cpgi213	CpG island 213	798 bp proximal
Rr410291	regulatory region 410291	1240 bp proximal
Rr410292	regulatory region 410292	1741 bp proximal
Rr410293	regulatory region 410293	1861 bp proximal
Tgfbrap1	transforming growth factor, beta receptor associated protein 1	within coordinates
Tssr11467	transcription start site region 11467	1580 bp downstream