rs47453325 SNP Detail

Summary

• ID
  rs47453325
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:51370699 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAGAGGCC AACTTACAAG
  TGCTTTCAAC AGCACCAGAC CCAACACACA GAGATAGACA CCACCAGGAG AAATAATTCT
  TGCCATAGAC CTTACTTCCA CCTGATTGTC CCTGTCTTCA CAGCTCTAGC CTAGAGGCTA
  CCATCAATGA AAAACACCTG TGTGAGAATA AGAGGGCCCT GGGGACTATA TGCACTAAAC
  Y
  TCAGTATCAG AGGTCTGATG GGGAGTGTGG TGGGTCAGCT CGTGGAGGAA AAGAACCCTT
  ACAATGGATC TGGAGATGTG ACCACATTCT CTGATCCTCT TTCTCCTTAC GGAACAAGGA
  AAGGGATCTG AGTTGAAGAG ATCCTAGAGC TTCTGGCTAA GAATTGACTC TGTTCTTCTA
  ACATGACAGA TGCTTCTGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52288611	NES15304581	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47453325					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52288611	NES15304581	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:51370699 () rs orientation: forward

Symbol	Name	Function Class
Gm40645	predicted gene, 40645	within coordinates
Gm49339	predicted gene, 49339	within coordinates
Lilrb4a	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	within coordinates
Tssr93270	transcription start site region 93270	1862 bp downstream
Tssr93271	transcription start site region 93271	1744 bp downstream
Tssr93272	transcription start site region 93272	1689 bp downstream
Tssr93273	transcription start site region 93273	1418 bp downstream
Tssr93274	transcription start site region 93274	885 bp downstream
Tssr93275	transcription start site region 93275	752 bp downstream
Tssr93276	transcription start site region 93276	698 bp downstream
Tssr93277	transcription start site region 93277	650 bp downstream
Tssr93278	transcription start site region 93278	614 bp downstream
Tssr93279	transcription start site region 93279	458 bp downstream
Tssr93280	transcription start site region 93280	11 bp downstream
Tssr93281	transcription start site region 93281	18 bp upstream
Tssr93282	transcription start site region 93282	42 bp upstream
Tssr93283	transcription start site region 93283	119 bp upstream
Tssr93284	transcription start site region 93284	453 bp upstream
Tssr93285	transcription start site region 93285	678 bp upstream
Tssr93286	transcription start site region 93286	792 bp upstream
Tssr93287	transcription start site region 93287	1154 bp upstream
Tssr93288	transcription start site region 93288	1414 bp upstream
Tssr93289	transcription start site region 93289	1482 bp upstream
Tssr97556	transcription start site region 97556	92 bp upstream
Tssr97557	transcription start site region 97557	231 bp downstream
Tssr97558	transcription start site region 97558	1418 bp downstream
Tssr97559	transcription start site region 97559	1888 bp downstream
Tssr97560	transcription start site region 97560	1984 bp downstream