rs47453616 SNP Detail

Summary

• ID
  rs47453616
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:22036543 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTTATCTG AACCGGGTTT
  GGAGTAAGGC TTGAAACTCG ACTTGTCCTC CACGCCGATG TCGCTCAGCT TCAAGGGGCC
  CGACTTGGCG TCCTTGTCGC CCCCAGCTCC GTTGCCTGCA CCACCCGCGC CGCCGCCGTT
  GGAGGCGACC GAGGAGAGTT TGGAAGAAGG CGAAGGGTCC GGCTTCCCTA TCTGCGAACA
  Y
  GTTTGAGCCA GCAGCGCCAG TGGGCTCTTC TTGGCGTCCA GCTGCGGAGT CAGATGGGGA
  GGGGTTCACA CAGAGAAAGA GAGAAACCCT TTAGAAACCT GCACTTAGGG TTCTAGTGCC
  CTTCGTAACA GCCCGCGAAA AGCATTTCAA CTTCCAGGCG CAATTCTAAG TGGCACCCCA
  CTCCGTATCC TTGGGAAAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	MSM/Ms
ss139201785	ENSMUSSNP67706	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	MSM/Ms
rs47453616					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:22036543 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6225	CpG island 6225	within coordinates
Cpgi6226	CpG island 6226	609 bp proximal
Rr488632	regulatory region 488632	283 bp distal
Rr488633	regulatory region 488633	200 bp distal
Tssr127698	transcription start site region 127698	818 bp upstream
Tssr127699	transcription start site region 127699	1018 bp downstream
Tssr127700	transcription start site region 127700	1081 bp downstream
Tssr127701	transcription start site region 127701	1386 bp downstream
Tssr127702	transcription start site region 127702	1410 bp downstream
Tssr127703	transcription start site region 127703	1519 bp downstream
Tssr127704	transcription start site region 127704	1939 bp downstream
Zfp503	zinc finger protein 503	within coordinates