rs47453897 SNP Detail

Summary

• ID
  rs47453897
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:57524270 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAGGCCAT CTTACCTTGC
  AGGATAATTC TGGTCTCAGA GTCTGTGTCT GGCACTTGGT CGCTAAGGTC TGCGGCAGGC
  ACATCCACCT TCTGCACTCC CCCTGCAGGG TGAGAGTGAA GCCGTGGATG GCACCAGCTT
  CTCTCTCACC CCTTCCTTTG TACCCTACCC CACCTTGCCC TCTCTGCCTG CCTCACCTTG
  R
  CCGAGCTTCT CTGGGTCCAG TGTATGGATG GCCACAGTTT TGTTGATTCT CATTCCTTCT
  GGCTGTGGAG GGTGGTGGAT AAAATGACAA CAGATACACA GATGGTCAGC AGGGTACTCT
  TCAGAGAAAG TCCTTCCAAA GGCCCCTGCC TCTCTGCCTG TATGACTGGA GACCAGTTAC
  TTAACCTCTC TATGTCTCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62812238	NES17355876	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47453897					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62812238	NES17355876	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:57524270 () rs orientation: forward

Symbol	Name	Function Class
C3	complement component 3	within coordinates
Gm65552	predicted gene, 65552	within coordinates
Mir6978	microRNA 6978	42 bp upstream
Rr405394	regulatory region 405394	1914 bp upstream
Tssr148926	transcription start site region 148926	1374 bp upstream
Tssr148927	transcription start site region 148927	100 bp upstream
Tssr148928	transcription start site region 148928	618 bp downstream
Tssr148929	transcription start site region 148929	862 bp downstream
Tssr148930	transcription start site region 148930	922 bp downstream
Tssr148931	transcription start site region 148931	1236 bp downstream
Tssr148932	transcription start site region 148932	1386 bp downstream
Tssr148933	transcription start site region 148933	1602 bp downstream