rs47453990 SNP Detail

Summary

• ID
  rs47453990
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:122518812 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGAG ACTGAAGACA CTGCTGGGAG
  C
  CCAGAATGCT CAGATGCCCA GTGAT                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss145806686	ENSMUSSNP694033	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs47453990					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:122518812 () rs orientation: forward

Symbol	Name	Function Class
Jph3	junctophilin 3	990 bp downstream
Rr671926	regulatory region 671926	86 bp proximal
Tssr79823	transcription start site region 79823	258 bp upstream
Tssr79824	transcription start site region 79824	376 bp upstream
Tssr79825	transcription start site region 79825	405 bp upstream
Tssr83237	transcription start site region 83237	111 bp downstream
Tssr83238	transcription start site region 83238	127 bp downstream
Tssr83239	transcription start site region 83239	141 bp downstream
Tssr83240	transcription start site region 83240	189 bp downstream
Tssr83241	transcription start site region 83241	262 bp downstream