rs47455722 SNP Detail

Summary

• ID
  rs47455722
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:8768697 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGCCAGGC TTGTGGCTAC
  CAGCCAGGCT GTAGTGGTGC ACGCCTCTAA TCCCAGCACT TGAGAGGCAG AGGCAGGGGA
  GTTTCTGAGT TTGAGGCTAG CCTGCTCTAC AGAGTGAGTT CCAGGACAGA GAAACCCTGT
  CTCAAAAAAC AAAACAACAA CAACAACAAA AAGAATACTG CAAAGACAGA ATTTTCAATA
  R
  TTTTTGGCTT TTACCTAATC TGTGTGGGCT TATATTAAGC TCAGAAATCA TAGAAGCTTT
  AAAAGTAACT CTCTTTAAAC TCTTTCTTGT TTCTCTGTTG TTTTGAGGAC AAAATCCAAA
  CTACTTAGGA TGACCAAAAG TTTAATAAAA CAGCTGATGT TCTAAATGGG GTTATTCAGT
  AAAAATTTAA ACCTTTATTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss61347493	NES16965318	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G		A	G	G		A
ss323886257	CHEV_12_8725503	CHEVERUD	SCREENING_POP	f	SNP											A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs47455722					SNP	G	G	G	G	G	G	A	G	G	G	A	A	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61347493	NES16965318	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:8768697 () rs orientation: forward

Symbol	Name	Function Class
Pum2	pumilio RNA-binding family member 2	within coordinates
Rr258442	regulatory region 258442	904 bp proximal