rs47458920 SNP Detail

Summary

• ID
  rs47458920
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:60704030 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGTT GTGTCCCAGA TTAAAGGGGT
  R
  AACCACCACC CCTGAATCTT GGACT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss132265232	ENSMUSSNP540566	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs47458920					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:60704030 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2996	CpG island 2996	1821 bp distal
Gm74448	predicted gene, 74448	within coordinates
Rr402613	regulatory region 402613	1738 bp downstream
Rr448487	regulatory region 448487	1449 bp distal
Shmt1	serine hydroxymethyltransferase 1 (soluble)	1968 bp upstream
Tssr108310	transcription start site region 108310	1994 bp upstream
Tssr108311	transcription start site region 108311	1963 bp upstream
Tssr108312	transcription start site region 108312	1934 bp upstream