rs47459227 SNP Detail

Summary

• ID
  rs47459227
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:56527872 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCCATCCAGG TCTTCGGCTC CCTCTTAGCT ATCCTGCCCA
  CCCATCTACC CTACGCCCTG CCACTGCTCA TGGCTGTGAG AGAGAAATAG AGAGTTGCTC
  W
  GCTGAGGTTG GTTCTCAGTA GTATCCACCC CTGGTGGCAG CATACATACA TATCAGGTCA
  GTCTAAACTA CCAAAGGGCC TGAGCCAACT GCGCAAGCT                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	DBA/2J	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
ss61809672	NES17749523	PERLEGEN	MM_PANEL2	f	SNP	A	T		T	T		A
ss324346598	CHEV_13_56481420	CHEVERUD	SCREENING_POP	f	SNP			T			A
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	DBA/2J	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
rs47459227					SNP	A	T	T	T	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61809672	NES17749523	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:56527872 () rs orientation: forward

Symbol	Name	Function Class
Rr272828	regulatory region 272828	within coordinates
Rr284344	regulatory region 284344	729 bp proximal