rs47459514 SNP Detail

Summary

• ID
  rs47459514
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:164287637 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTCAAAAGGG ATGAGACTTG GCTGGAGTTT GATGGTTTCT
  GCCTATAATC CCAGACTGGA GATAGGCAGG AGGATTACAC ATCTGAGGAA GAAAGAAAAG
  Y
  GAGTAAGAGG ACTCTTAAGA CTGATGCGGT GACCATTCCT CATAGCCAGT GTACCTCAAA
  CCCCCAGAAC AGTTTGCAAA CAGTTCATCG TGGCAGGTT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145978949	ENSMUSSNP4874956	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47459514					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:164287637 () rs orientation: forward

Symbol	Name	Function Class
Atp1b1	ATPase, Na+/K+ transporting, beta 1 polypeptide	1713 bp upstream
Cpgi945	CpG island 945	992 bp distal
Gm32391	predicted gene, 32391	within coordinates
Gm70485	predicted gene, 70485	within coordinates
Gm70492	predicted gene, 70492	1322 bp upstream
Tssr9788	transcription start site region 9788	1538 bp downstream
Tssr9789	transcription start site region 9789	1521 bp downstream
Tssr14747	transcription start site region 14747	1705 bp upstream
Tssr14748	transcription start site region 14748	1331 bp upstream
Tssr14749	transcription start site region 14749	771 bp downstream
Tssr14750	transcription start site region 14750	786 bp downstream