rs47459927 SNP Detail

Summary

• ID
  rs47459927
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:45569916 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGAG GAGGGCCAGG GAGGTAGGGA
  R
  GTCTCTGGTG TGAGGGAGAA GGGGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61002550	NES16125147	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	A	A	A	G	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47459927					SNP	G	A	A	A	A	A	G	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61002550	NES16125147	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:45569916 () rs orientation: forward

Symbol	Name	Function Class
Emp3	epithelial membrane protein 3	Intron
Gm45442	predicted gene 45442	1648 bp downstream
Gm72819	predicted gene, 72819	1953 bp downstream
Rr400324	regulatory region 400324	698 bp upstream
Rr646608	regulatory region 646608	1017 bp distal
Rr646609	regulatory region 646609	349 bp proximal
Rr646610	regulatory region 646610	1559 bp proximal
Tssr72489	transcription start site region 72489	1133 bp upstream
Tssr72490	transcription start site region 72490	299 bp upstream
Tssr72491	transcription start site region 72491	71 bp upstream
Tssr72492	transcription start site region 72492	135 bp downstream
Tssr72493	transcription start site region 72493	159 bp downstream
Tssr72494	transcription start site region 72494	183 bp downstream
Tssr72495	transcription start site region 72495	189 bp downstream
Tssr72496	transcription start site region 72496	208 bp downstream
Tssr72497	transcription start site region 72497	338 bp downstream
Tssr72498	transcription start site region 72498	619 bp downstream
Tssr72499	transcription start site region 72499	769 bp downstream
Tssr72500	transcription start site region 72500	926 bp downstream