rs47460709 SNP Detail

Summary

• ID
  rs47460709
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:102211437 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCCC ACTGCCATCG GTTCTAGTGG
  K
  CTTTACCTCC CCTGCTAGTG GGCTG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss132735555	ENSMUSSNP6533687	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss323834544	CHEV_11_102181925	CHEVERUD	SCREENING_POP	f	SNP			G	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs47460709					SNP	G	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:102211437 () rs orientation: forward

Symbol	Name	Function Class
C030013E06Rik	RIKEN cDNA C030013E06 gene	within coordinates
Cpgi3917	CpG island 3917	within coordinates
Rr245873	regulatory region 245873	within coordinates
Tssr111032	transcription start site region 111032	1607 bp upstream
Tssr111033	transcription start site region 111033	1506 bp upstream
Tssr111034	transcription start site region 111034	1262 bp upstream
Tssr111035	transcription start site region 111035	1165 bp upstream
Tssr111036	transcription start site region 111036	752 bp upstream
Tssr111037	transcription start site region 111037	333 bp upstream
Ubtf	upstream binding transcription factor, RNA polymerase I	869 bp upstream