rs47460874 SNP Detail

Summary

• ID
  rs47460874
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:142203090 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G AAATGACTTC CAACTGTTTA TCTCCGCTTG TTCTAACTTC
  TTGGCATCCC TAGTTGCTGT TTAGAACAGA ATCACCTCCA GAATAGCAGG CAACCATACT
  R
  TTTGCATGAA CAATATAGCA GAGCATGAGC TGCGCAGTAA AAGGTCTGAG ACTGGGGCTC
  TAACCAGCGC TCCCATTGTC GGGAAGTGAA TTCCCAGACA G                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss136014831	ENSMUSSNP2808228	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs47460874					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:142203090 () rs orientation: forward

Symbol	Name	Function Class
Gbp5	guanylate binding protein 5	within coordinates
Rr398084	regulatory region 398084	528 bp downstream
Rr586446	regulatory region 586446	419 bp distal
Rr586447	regulatory region 586447	within coordinates
Rr586448	regulatory region 586448	1666 bp proximal
Tssr32047	transcription start site region 32047	540 bp downstream
Tssr32048	transcription start site region 32048	525 bp downstream
Tssr32049	transcription start site region 32049	499 bp downstream
Tssr32050	transcription start site region 32050	437 bp downstream
Tssr32051	transcription start site region 32051	390 bp downstream