rs47462128 SNP Detail

Summary

• ID
  rs47462128
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:123260890 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAATAGCA GCCTTAACAT
  AGCAAACAAC TTACATATTT GTTATTTAAC TATCATTTTG GGAGATGGAA ATTATAATCT
  CCATTTTATC AATGAGAAAA CCCATTTGCC TACATCATCA GATGGTGGGA CATTACTGGA
  TTTTTATGCT GTTATGCAGA TCTATAGATT TAAACTCATA AAGGGGCATC ATGGTGAGTA
  Y
  TGCTGGCCTG GCATATGTGC TGCCTCTGTT CTTCTACCTT ACACCAATAT TACTTTTACT
  GCTCTGCCAG AGTTTGTTTT CCTGAGGCAT CCTTCATGTA CAGTAAGCCA CATCTTAGGT
  TTTAGGGCAG TCAAGCCCCT AAATTCATAG CTGCTGCTTG ATTTCAATGA AGACAAATAG
  TGAAAACCAA CTGCAAACTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60936891	NES16189338	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47462128					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60936891	NES16189338	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:123260890 () rs orientation: forward

Symbol	Name	Function Class
Clec4e	C-type lectin domain family 4, member e	Intron
Tssr58808	transcription start site region 58808	1151 bp downstream
Tssr58809	transcription start site region 58809	514 bp downstream
Tssr58810	transcription start site region 58810	489 bp downstream
Tssr58811	transcription start site region 58811	400 bp downstream
Tssr63020	transcription start site region 63020	1427 bp upstream
Tssr63021	transcription start site region 63021	1349 bp upstream
Tssr63022	transcription start site region 63022	1310 bp upstream
Tssr63023	transcription start site region 63023	1255 bp upstream
Tssr63024	transcription start site region 63024	1157 bp upstream
Tssr63025	transcription start site region 63025	1125 bp upstream
Tssr63026	transcription start site region 63026	1104 bp upstream
Tssr63027	transcription start site region 63027	1066 bp upstream
Tssr63028	transcription start site region 63028	1041 bp upstream
Tssr63029	transcription start site region 63029	1013 bp upstream
Tssr63030	transcription start site region 63030	957 bp upstream
Tssr63031	transcription start site region 63031	927 bp upstream
Tssr63032	transcription start site region 63032	896 bp upstream
Tssr63033	transcription start site region 63033	882 bp upstream
Tssr63034	transcription start site region 63034	856 bp upstream
Tssr63035	transcription start site region 63035	841 bp upstream
Tssr63036	transcription start site region 63036	774 bp upstream
Tssr63037	transcription start site region 63037	741 bp upstream
Tssr63038	transcription start site region 63038	716 bp upstream
Tssr63039	transcription start site region 63039	648 bp upstream
Tssr63040	transcription start site region 63040	604 bp upstream
Tssr63041	transcription start site region 63041	557 bp upstream
Tssr63042	transcription start site region 63042	537 bp upstream
Tssr63043	transcription start site region 63043	520 bp upstream
Tssr63044	transcription start site region 63044	485 bp upstream
Tssr63045	transcription start site region 63045	405 bp upstream
Tssr63046	transcription start site region 63046	392 bp upstream
Tssr63047	transcription start site region 63047	371 bp upstream
Tssr63048	transcription start site region 63048	337 bp upstream
Tssr63049	transcription start site region 63049	313 bp upstream
Tssr63050	transcription start site region 63050	268 bp upstream
Tssr63051	transcription start site region 63051	246 bp upstream
Tssr63052	transcription start site region 63052	1256 bp downstream
Tssr63053	transcription start site region 63053	1366 bp downstream
Tssr63054	transcription start site region 63054	1533 bp downstream
Tssr63055	transcription start site region 63055	1560 bp downstream
Tssr63056	transcription start site region 63056	1601 bp downstream
Tssr63057	transcription start site region 63057	1634 bp downstream