rs47464939 SNP Detail

Summary

• ID
  rs47464939
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:37513176 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACAAAGTG GGCTGCAAAG
  ACTGATTACC AGTCAAAGGC CATCATCGAG GCAGAGACAA ATGGATCTCC GAGTGCGAGA
  TCAGACTGGA CTCCACAGCT CAGACCAGCC AGGGCTACAC AGTGACACCC TGTCTCAAAG
  AAAGGCCTTT ACAGAATGAG AAAGCATTTT CATGTACAGC TTTAAATAAC TCATGAATTT
  M
  ATATCGGACC ACATACCACA CGAAAGGGTC TGAAGAGGCC ACTAAGGCAT GCCGCTCAAG
  TCTAATCTGA CCTGAACTCT GGAAGTGTTT GGGCTTCATG TCCTTTGTCC TCCTGTCTTA
  GGCTGACTCC TCTGAGACTA GTGTCCTGAC ACAGCAAAGG CTGCCTCGGG TTGTTTCTGC
  ATAACTTCCT CCTTTCAGAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	MSM/Ms	SM/J
ss148941470	ENSMUSSNP3390429	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		C
ss319691762	CHEV_1_37530940	CHEVERUD	SCREENING_POP	f	SNP			C		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	MSM/Ms	SM/J
rs47464939					SNP	A	A	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:37513176 () rs orientation: forward

Symbol	Name	Function Class
Mgat4a	mannoside acetylglucosaminyltransferase 4, isoenzyme A	Intron
Rr396000	regulatory region 396000	548 bp upstream
Rr409534	regulatory region 409534	1909 bp distal
Rr409535	regulatory region 409535	392 bp distal
Rr409536	regulatory region 409536	within coordinates
Tssr11302	transcription start site region 11302	1360 bp downstream