rs47465460 SNP Detail

Summary

• ID
  rs47465460
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:134942907 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T AAGTGGAGAT GTACAGTGCT TCCACGCCAC TAGAAATGCC
  AAAAGAAACA GTATATCAGT GGGCTATTTA CGTAGCATGC ATGATGTAAC GGGTTCAATG
  Y
  TAAACATCTA ACAACATGAG CAGTAGCAGC ATTTTCTTAA AATTCCAAGT TGAGAATGTA
  ATCACTTTTC GTTGTGTTAA TAGTTGGACA ATAAGAGCTT T                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147641091	ENSMUSSNP3104330	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs47465460					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:134942907 () rs orientation: forward

Symbol	Name	Function Class
Plcb1	phospholipase C, beta 1	Intron
Rr565720	regulatory region 565720	390 bp proximal
Rr565721	regulatory region 565721	962 bp proximal