rs47465940 SNP Detail

Summary

• ID
  rs47465940
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:85004340 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTATCATAGA ACTACCTCCC
  TGCCTTTGGT TTTTTTCTCA AGTGCCTTAA CCATGAACTC AGACTGGCCT AAAACATGGT
  ATGTTGTCCA AGCAAGACAC AATACTTATC TGACAAATTC ATAAATGCAT ATAGTGTATT
  TTGGTCATTT TCACCCCATA CTACCCTCTC TCATCCCCCT CCCACTCCTG CTGAATCCCC
  R
  CTTCTTCCTA GCAAGAAAGC CCTTTCCCAT GCCATGTCTT TCTGTTGCTG CTGACGTCTA
  TACCCACTGA ATTTAGTTAG GGCTGCTCAC AGATGAACGC GATTCACTGT GGAAAGTGGA
  CAATTACACA TGCTAAGGAC AGCGACAGAG AAGTGTGAAG GTCAGGCAGG ACAGCGGTAA
  CCTTGCCTTA AGAGCCAGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52450113	NES15422030	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47465940					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52450113	NES15422030	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:85004340 () rs orientation: forward

Symbol	Name	Function Class
Arel1	apoptosis resistant E3 ubiquitin protein ligase 1	within coordinates
Rr469770	regulatory region 469770	792 bp distal
Tssr117049	transcription start site region 117049	1992 bp downstream