rs47467548 SNP Detail

Summary

• ID
  rs47467548
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:85871211 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATAATACAT GAGGAAAAGT
  GAAAGCTCGT TGCAGAGCTA GGTTCATAAC GACTGCCCGT TCACTCACCC ATCCCCAGAA
  TTGACCAAAT CTCCATTTTC CTAGCACCTC CTCTTGGACA TCGTTTCTAG ACTCCTCCAC
  CACCACCTCC GGTTGCTTTC CAGGCAACCC CCACTTTCCT AAATTTTGCA GATAGTTTTA
  M
  TCGGGTGCTA CATCCCACTC CAAATTCTCC TACCTGACGA TCCAGTACTA CTGCAGCAGT
  ATCAGCAGCA TCCGCAAACC AGCTCTCCCT AGGCCAGCTC CGGTCCCAAG TCCACCTGGG
  CCACTTGTTC CCGCCCCCTC CCTCAGCCCA GCTCCAGGAT TGGGTTGTTT TTGTCAGTCC
  TCGTTCTGAT TGGCTACGCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52451570	NES15428282	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	A	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47467548					SNP	C	C	C	C	C	C	A	C	C	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52451570	NES15428282	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:85871211 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4904	CpG island 4904	30 bp proximal
Erg28	ergosterol biosynthesis 28	within coordinates
Rr265707	regulatory region 265707	1410 bp distal
Rr265708	regulatory region 265708	within coordinates
Tssr114435	transcription start site region 114435	196 bp upstream
Tssr114436	transcription start site region 114436	481 bp upstream
Tssr117107	transcription start site region 117107	59 bp downstream
Tssr117108	transcription start site region 117108	69 bp downstream
Tssr117109	transcription start site region 117109	123 bp downstream
Tssr117110	transcription start site region 117110	408 bp downstream
Ttll5	tubulin tyrosine ligase-like family, member 5	206 bp upstream