rs47468164 SNP Detail

Summary

• ID
  rs47468164
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:80632502 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTATTCAG CTGGAACCTG
  GCCTCCTCGG AGATGCCAAA CTGCTCCAGG GGGTCCTGTG GAGGGCACGG TGGCTGTGAG
  CAAGGCCAGG GAAAGCTGTC CCATCCCTGA CCGCCCCACA TACCTTGCCA GTCATCTTCC
  TGATCTCATT CCTGTAGAAG ATGAGGCTCT GTCGCATGTA TTCGTAGCTG GAGGAAAGGA
  Y
  TGGGCTCACT GTTCACATTC CCCCATGTTT CCACCCAGCT CCCATCAGTC CCTAAAGCCC
  CACCTGGCCC GCTGCAGAGC TTCCATCCAG TCCTGACACT GCTCTTGGCT ACAGCATTCA
  AAGTGATATT TCCTGCTGAG GTCTTCGACG AAGCCTGGAA AGGGATAAAG GATAAGAGCC
  ACCTCTGGTC AGTGTCCAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ
ss61290506	NES16901677	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ
rs47468164					SNP	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61290506	NES16901677	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:80632502 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1908	CpG island 1908	814 bp proximal
Dot1l	DOT1 like histone lysine methyltransferase	1207 bp downstream
Plekhj1	pleckstrin homology domain containing, family J member 1	within coordinates
Rr435393	regulatory region 435393	1040 bp proximal
Rr435394	regulatory region 435394	1541 bp proximal
Rr435395	regulatory region 435395	1948 bp proximal
Tssr94606	transcription start site region 94606	1285 bp upstream
Tssr94607	transcription start site region 94607	1363 bp upstream
Tssr94608	transcription start site region 94608	1945 bp upstream
Tssr94609	transcription start site region 94609	1962 bp upstream
Tssr94610	transcription start site region 94610	1984 bp upstream
Tssr98506	transcription start site region 98506	295 bp upstream
Tssr98507	transcription start site region 98507	1193 bp downstream
Tssr98508	transcription start site region 98508	1251 bp downstream
Tssr98509	transcription start site region 98509	1301 bp downstream
Tssr98510	transcription start site region 98510	1324 bp downstream
Tssr98511	transcription start site region 98511	1523 bp downstream
Tssr98512	transcription start site region 98512	1552 bp downstream
Tssr98513	transcription start site region 98513	1808 bp downstream