rs47469947 SNP Detail

Summary

• ID
  rs47469947
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:35955990 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGTACTCT GCTGTGAGAA
  AAAGTGTATT GTTCAGTTTC CCTGTAAATA GCAGGCTAGT TTGTTTCATG AACATGGCTT
  CCTGCTGAGC TGCCATTGCC TTTGTGGTCA TTATTCTGTT CACATCTGAA TCGAGATGAT
  TTTGTATTAA ACCCAACTGT TGGTCCCTTT CTTCTCAAAC ACATTTGAAG TTGTCTTGCG
  K
  TTCTCCAGTG GAGGGGCGGT CATCGAGGGT TTCTGGAACC GCAGCTCTAG AGCGCCCTCT
  CCTGTCCTCA GCAGCCACTT GAAAAGGTGC CCTGGTGTTG TGGAGCCCAG GGTCTGTCTG
  TCATTCTCCC CCTCCCCTTT GTTTAGAAGG GTCCTTCCAT TTCCCTGCAC CTGTTCTTTC
  TGCCCTGGTG GTTTGCTGTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61762181	NES17696625	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47469947					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61762181	NES17696625	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:35955990 () rs orientation: forward

Symbol	Name	Function Class
Cdyl	chromodomain protein, Y chromosome-like	within coordinates
Gm48708	predicted gene, 48708	1566 bp downstream
Rr477255	regulatory region 477255	within coordinates
Rr477256	regulatory region 477256	49 bp proximal
Rr477257	regulatory region 477257	572 bp proximal
Rr477258	regulatory region 477258	1708 bp proximal
Rr477259	regulatory region 477259	1844 bp proximal
Rr477260	regulatory region 477260	1857 bp proximal
Rr477261	regulatory region 477261	1956 bp proximal