rs47471285 SNP Detail

Summary

• ID
  rs47471285
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:141430749 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTGGTATA CTCTAAGTAA
  ATGTAAGTTT GAATAATTAA ATTCACATCT CGAAATCTCA GATATATAAT ACATAAGGTC
  ATTAGACTAG ACTATGAGAG TTGAAAGGTT TTCCTCCTAA GAGAAATAGT CCCCCAGTCC
  TTCACCAAGG AATGCTGTGA GATTATGTTG GGGCATTTAA TTCAAATCCA TATTTTCTGA
  R
  GAGCTACTCT ATAAAATACA CCATGCATAA AAGTATATCC AACCTCAGAA CATTTTCATA
  TTTTAAATAA GCATAGAGCT GGGTCTGAAG GTGCAAATCT ATTATCCCAG CCATTTGGCA
  GGCTGAGGCA GAAGAACTGT CGAGTTGTAG GGTAGTTTGG GCTACAGAAG GCATTCAGAG
  ACAGGTTGGA CATGTTCATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss61091303	NES16613428	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs47471285					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61091303	NES16613428	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:141430749 () rs orientation: forward

Symbol	Name	Function Class
Rr74631	regulatory region 74631	548 bp proximal
Unc5c	unc-5 netrin receptor C	within coordinates