rs47471419 SNP Detail

Summary

• ID
  rs47471419
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:156036744 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAAAA CCAACTAGGC CTCCAGCTTC
  W
  GATGGCTGAA AACAGTGACT GTGGA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320578146	CHEV_2_156020560	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs47471419					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156036744 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12545	CpG island 12545	1421 bp proximal
Gm75148	predicted gene, 75148	within coordinates
Phf20	PHD finger protein 20	1823 bp upstream
Rr374121	regulatory region 374121	within coordinates
Rr397432	regulatory region 397432	1635 bp upstream
Tssr21145	transcription start site region 21145	1883 bp upstream
Tssr27045	transcription start site region 27045	1699 bp downstream