rs47472768 SNP Detail

Summary

• ID
  rs47472768
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:84339940 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGGGAGAAG TGGGGGACAG
  CTCTCCTGAG ATTTCCCCAG CCCAAACAGG ATTGCCTAGA GTCCTGTCTT TATTTGAAAT
  TATGTTATTT TGTTAGTCTT GGGGTTGTGC CTTTTGGTGT TTTACAATGT TTATCTTTGT
  CACTGTGCTC TCTTTACCTA TTTCCCTGAA ATTTCTGCCC TATTTTTACA GTAATAGGGG
  Y
  TCATGGTCAC AAGGTTGAGA TACGGCTAAC CATGTGTGGT TTGGGCTGCT TTCTGTAATC
  CTGTAGAATA AGGAGGAGAC AGAATAGAGG ACATGGTGGA GGTCAGGTAG AATTCTTTGA
  AGAAAAGGTG GCATTTGAAA AATTCTTATG ACTTCATGGA AAACGAAAGG AAGTGTTCCT
  GAAGAGGGCT TGGGAGAAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss145208993	ENSMUSSNP498805	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs47472768					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:84339940 () rs orientation: forward

Symbol	Name	Function Class
2610206C17Rik	RIKEN cDNA 2610206C17 gene	within coordinates
Cpgi19383	CpG island 19383	223 bp distal
Rr400423	regulatory region 400423	617 bp downstream
Rr650631	regulatory region 650631	1699 bp distal
Rr650632	regulatory region 650632	978 bp distal
Rr650633	regulatory region 650633	786 bp distal
Rr650634	regulatory region 650634	285 bp distal
Tssr73444	transcription start site region 73444	911 bp upstream
Tssr73445	transcription start site region 73445	898 bp upstream
Tssr73446	transcription start site region 73446	833 bp upstream
Tssr73447	transcription start site region 73447	814 bp upstream
Tssr73448	transcription start site region 73448	793 bp upstream
Tssr73449	transcription start site region 73449	768 bp upstream
Tssr73450	transcription start site region 73450	741 bp upstream
Zfand6	zinc finger, AN1-type domain 6	716 bp upstream