rs47472872 SNP Detail

Summary

• ID
  rs47472872
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:51489341 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCCCACTCAA CAGCTTAAGA CTGCATCTCA CCCAGGTCAC
  TGTGGCTAGC ACCAAGAAAG CACGGACCAC AAATGCTAGT GAGGATCCAG GGAAAGCCCA
  C
  GCCTTGTTTC CTACTGGCAG GAGTGTAAGC TGGCATGGCC ACATTGAAAT CAGTGTGGCA
  GTTTCTCCAC AATCTACCAT CTGATCCAGC TATCCCACT                       
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss139477893	ENSMUSSNP1153052	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss324622183	CHEV_14_51871559	CHEVERUD	SCREENING_POP	f	SNP		C	C
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs47472872					SNP	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:51489341 () rs orientation: forward

Symbol	Name	Function Class
D14Mit257	DNA Segment, Chr 14 Massachusetts Institute of Technology 257	977 bp distal
Gm62421	predicted gene, 62421	within coordinates
Tssr125425	transcription start site region 125425	1980 bp upstream