rs47473213 SNP Detail

Summary

• ID
  rs47473213
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:108132798 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGAAACTG AGGCCATGGG
  CCGGTGAATG TTTCAAGGTC ACAGGGTAAA TCTAATATTG AGCTATACTC TAGAATGCTG
  ACAGGCATTT GATCCATGTT TGACTAATGT TGGAAACTAG TGTCCAGAGA AGTGACTTGT
  CCAAGGTCAT AGAGCTGAGA CAGGTAGCTC TAGGCCTGCA ACCTACCATC CCTCCTTCCC
  R
  GCTCAATGTT CTGTTATGCC AGCTGTCACA TTTTCTTCTG TCTTAATTGG TTTTTTTATG
  TAATCATTGG ATTGGGAAAC TGTTCATTCA TCCATCCATT TCTTTACTCG GTTACAGTTT
  CCCAAATTGC TCCAGTGACT TCAGCTGGTA GTCTGTCTCC TGAGTCCACC CCAGGGATCA
  TCCAGGTCCT AGAAGGTTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	MSM/Ms
ss135585512	ENSMUSSNP2644101	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	MSM/Ms
rs47473213					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:108132798 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13695	CpG island 13695	355 bp proximal
Gm40123	predicted gene, 40123	641 bp upstream
Rr583179	regulatory region 583179	151 bp proximal
Rr583180	regulatory region 583180	1156 bp proximal
Rr583181	regulatory region 583181	1245 bp proximal
Sypl2	synaptophysin like 2	Intron
Tssr35135	transcription start site region 35135	1091 bp downstream
Tssr35136	transcription start site region 35136	1116 bp downstream