rs47473892 SNP Detail

Summary

• ID
  rs47473892
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69001860 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGTTAAGGC GTTGGACTCG AAATCCAATG GGGTCTCCCC
  GCGCAGGTTC GAATCCTGCT CACAGCGCTA GTAGTTTTGG TATTGCTGTC CCGATTAGCG
  R
  AAAGTAGTTT ATTTTATTTT CCAGTTCTTT CTTTAAAGAA GCTCCCACTG GGATTCTGTC
  ACCCGGGACC GTTTCGGTAG CGCCTCGGTA CGACTTACT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss132349069	ENSMUSSNP6371398	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss323727520	CHEV_11_68924536	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs47473892					SNP	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69001860 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3105	CpG island 3105	within coordinates
n-TScga3	nuclear encoded tRNA serine 14 (anticodon CGA)	34 bp downstream
n-TTagt5	nuclear encoded tRNA threonine 5 (anticodon AGT)	496 bp downstream
Per1	period circadian clock 1	1074 bp downstream
Rr402659	regulatory region 402659	161 bp downstream
Rr449875	regulatory region 449875	within coordinates
Rr449876	regulatory region 449876	441 bp distal
Rr449877	regulatory region 449877	948 bp proximal