rs47474444 SNP Detail

Summary

• ID
  rs47474444
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:97939092 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTATCATTG GAAAGCTCCA
  ACCTGGAACT TCAAAATAAC AAAAATTAGT TCCCAAGCTT GCCTTGTCCA ATACGGAAGA
  AAGATAAAGA TGGGGAATGG ACAGCAGCTA TTTAAGCACA GTCAGCTCTA CTGTTTGATC
  ATAATCAGCA CATGCATGTT TACTCATGTT TCACTTAGTA AAGGTAGTAG TAATGCCATG
  M
  ATCTATTTTA TAAGTAGTCC CTGTATAGCT AAATACCCAA CTATGCATAC TCTCCCTAAA
  GATCTGATAC AATGCATTAT GTGTCAATTT ATCTACTTGT CAGTATAATG TATTCCTTAT
  CTAATTCATT CGACTTTGTG GAATTCTTAC AGGGAAGAGG AATTACATTT TTCATGATAT
  TGTTCCCAGT GCTGGGACTA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss137982496	ENSMUSSNP1179841	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs47474444					SNP	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:97939092 () rs orientation: forward

Symbol	Name	Function Class
Rr258643	regulatory region 258643	1309 bp proximal
Rr269010	regulatory region 269010	1074 bp proximal