rs47477172 SNP Detail

Summary

• ID
  rs47477172
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:10157133 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATTCTATG CAGTGCCAAA
  AGTCTGTCAG TGACTATGAC TCTGCCGCCA GCATCGTAAG CCACCTCCTG CTCTCTGACA
  TCAGCGCTGT CCTCTTTTCT CCTGTGAAGT GATTACACGG GAAGCAGGGT AGCCTGGTGC
  CAGTTGCTTC CTGGAATATC ATGTTATCCC CACTAGGCGT GAAAGAATGT CAAGAAGGTG
  Y
  CTTGATTTAT TTACCAAACG GTAGAACTCA GGAGTATATG CTTAAGCTTA GCTCAGGGCA
  CCCAGTGGTA CATCGTCATA TGGAGGAGGG CACAATTGAA ATGCTTTGAC CAGGTATAGT
  GGTTAATACT TTATTGTTGA CTTGACACCT AACAAACCTG TGTGTTTCTA GATTAACAGA
  GATAGCAAGA CTCACTCTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss60369567	NES15864779	PERLEGEN	MM_PANEL2	f	SNP	T	C	T
SNP Consensus Information
SNP					Consensus Type	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs47477172					SNP	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60369567	NES15864779	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:10157133 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Myef2l	myelin expression factor 2 like			Intron
				Noncoding-Transcript-Variant
Rr573569	regulatory region 573569			467 bp proximal