rs47478331 SNP Detail

Summary

• ID
  rs47478331
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:81491823 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGCCAGAG TCACTTAAGC
  AAGCCACCTG GTGAGGTTAG CTAGCCTTGC ATTTCATAAA TATGTAAAAC TGAAACCCAA
  ACTCCCTGTA GCTCAACCCA CTCTAAGCAG AGAATGCACC ACCTCCCAGA AGCCATTGCA
  AGATGTGTGT GTGTGTGTGT GTGTGTGTGT GTTGGATATA TATCCTTAAG CACACAACTG
  S
  ATAGGGAAAG GAGAAAGATC TTTTCTTTGA GGATAAATTG TAAACAGTAA CAGGTTGGCG
  AATGCTGGAA ACCTGGGCTA TAGCAGGAAA GTCTAGGAAG GCTGCTATGA ACTAACTCCT
  AACCTGCTGC CCAGTCAGGA CCTGGCATAC TAAGCCTGAT AAAGAGCAGC GAGGGAAAGC
  AGCTTGACTC TACTCCTAGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147604572	ENSMUSSNP1668860	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47478331					SNP	C	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:81491823 () rs orientation: forward

Symbol	Name	Function Class
D18Mit2	DNA segment, Chr 18, Massachusetts Institute of Technology 2	within coordinates
D18Mit3	DNA segment, Chr 18, Massachusetts Institute of Technology 3	within coordinates
Gm30288	predicted gene, 30288	within coordinates