rs47478691 SNP Detail

Summary

• ID
  rs47478691
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:45609055 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCACCCAGGA AGATAATGCC
  ACAAAGACAC CCCCATCTCT CACACACTCG AAGGGAAGAT TTGTACCGCT CTGCCTGGCT
  CTCCTCTCCT CTTCCACTGC AGTGCAACGT GCCTGGGTTC TGAAATCTGC GTCCTTCTCT
  GCAGTATCTC AGGGCACTCT GTGGCTTGGG GGGTGGGTGA GCTTGAAATG GGATTCTGTA
  Y
  GCACCAAAAG GTACAACACA ACTGCAATGC AAACTGTCAA CGCAGATACA AGGATTTCCT
  TCAGTTAAAG TAACCAGGTG CAATTCCTGC TTCTGAAAGG GCTTATAGAA CAAGGGGACT
  GTTTAAAAAG AGCAAGGCTC TTTGGTGGGC CACAAAATTA GCATTTTCTT ATTTCAGCAC
  CTTTGTTATT GCTTCTGTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52410575	NES15387143	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47478691					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52410575	NES15387143	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:45609055 () rs orientation: forward

Symbol	Name	Function Class
Rr267454	regulatory region 267454	within coordinates