rs47479423 SNP Detail

Summary

• ID
  rs47479423
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:7354399 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACACACAC ACACACACAC
  ACACACACAC ACATAAACAC ACACATGCTG GTCTGGAGTT AAGGCTTTGA AAAGCTCCTG
  TGTAGACTTC CTTGAGGACA TGGAGAATTT CAGAATGTCT CCACGTTTCT GTCTTGGAGC
  AGAAATGGAG ACAGGTGTTG GTTTAGGGGA GGACAGTGGT GAGGTTAATG AGCGGAGGTA
  R
  GACATATGAT CCCATATTGA GATTATGAAA CAGTAACTTC TTCCACTTAC AAACCAGGTA
  ACCAGTTATG ACACCAGACT TGAACTGTAG ATCCACGAGG CTCAGACTTT GGGTATTTCT
  TTTTTCAGGT TTCCTGGTGA AGTCACTGTA GTTATCTGAA TTGATTAAGG TTCCCTTGCA
  TGGTGCTGTC ATACAGAAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60680455	NES16229702	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47479423					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60680455	NES16229702	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:7354399 () rs orientation: forward

Symbol	Name	Function Class
Mmp12	matrix metallopeptidase 12	within coordinates
Tssr2759	transcription start site region 2759	853 bp downstream
Tssr83714	transcription start site region 83714	1829 bp downstream
Tssr83715	transcription start site region 83715	1785 bp downstream
Tssr83716	transcription start site region 83716	1492 bp downstream
Tssr83717	transcription start site region 83717	1481 bp downstream
Tssr83718	transcription start site region 83718	1447 bp downstream
Tssr83719	transcription start site region 83719	1414 bp downstream
Tssr83720	transcription start site region 83720	1381 bp downstream
Tssr83721	transcription start site region 83721	1150 bp downstream
Tssr83722	transcription start site region 83722	869 bp downstream
Tssr83723	transcription start site region 83723	822 bp downstream
Tssr83724	transcription start site region 83724	503 bp downstream
Tssr83725	transcription start site region 83725	366 bp downstream
Tssr83726	transcription start site region 83726	271 bp downstream
Tssr83727	transcription start site region 83727	311 bp upstream
Tssr83728	transcription start site region 83728	403 bp upstream
Tssr83729	transcription start site region 83729	425 bp upstream
Tssr83730	transcription start site region 83730	905 bp upstream
Tssr83731	transcription start site region 83731	919 bp upstream
Tssr83732	transcription start site region 83732	960 bp upstream
Tssr83733	transcription start site region 83733	997 bp upstream
Tssr83734	transcription start site region 83734	1425 bp upstream
Tssr83735	transcription start site region 83735	1447 bp upstream
Tssr88067	transcription start site region 88067	1386 bp upstream
Tssr88068	transcription start site region 88068	1340 bp upstream
Tssr88069	transcription start site region 88069	894 bp upstream
Tssr88070	transcription start site region 88070	352 bp downstream
Tssr88071	transcription start site region 88071	1016 bp downstream