rs47479923 SNP Detail

Summary

• ID
  rs47479923
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45510636 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTATATAAAC AGTAGTTCAT
  CATTAACTGA AAAGGCACAT GTGGTATATG ACTCTGAGTA GCCATATACA CAGAGACCTA
  CGTGGCTCTC AGCATCTAAA GCAGCTGTGT GGCTTTCCCT GTGTCTCAGG AATACTTCCT
  GAAAAGAAAA AGTCATTACT GACGTCCTAG AGTGTCTCCT GTCTCCAGAT TAACCCAACA
  Y
  AGCCTCACTT CGCCAGTCAG AAGAGACCTC TGATGGTCTC CCTCTGAACA GTGGTTGAAC
  CAGGACCAAG GTAGCTGCTG ATGCTTGCAG CCCCTGCGAC CAGGCCTTGC AGGAGTCTGT
  CCTTGCCTTC CTTCCATCCT CTCCTGGCTC TGGCAGGAGG CAGCTGAGAA GAGCCAACTT
  TGTCTCTGAC CCCCTGGGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136415368	ENSMUSSNP4459119	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47479923					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45510636 () rs orientation: forward

Symbol	Name	Function Class
Dscaml1	DS cell adhesion molecule like 1	within coordinates
Rr195123	regulatory region 195123	1965 bp proximal
Rr200397	regulatory region 200397	1836 bp distal
Rr200398	regulatory region 200398	within coordinates
Rr200399	regulatory region 200399	1365 bp proximal
Rr203915	regulatory region 203915	920 bp distal
Tssr84806	transcription start site region 84806	1724 bp downstream