rs47480450 SNP Detail

Summary

• ID
  rs47480450
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:27030612 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTGCTTTTT CTTATATTAC
  TATGTGTGGC CATGTTAACT TGAGTGTGGT TTCCTGAAAG ATGGCCCTGT AGCTGGAGTT
  ACACGCAATT GTGAGTATTC AAATATGAAT GAAATGAACT TAACTCAATT CTCCTACAAG
  TTCAATGAGT CATCTTGGCA GTTCCAAACT TACACAAAGT TCTAATGCAT GAACTGGTCA
  W
  TAGTTATTAA TGTTTGCATA AAGTACTTGA GGTTTTCACA GTACGAATGA TATGGTTTTT
  CTGCCTTTGT GTTCTAAGCT AAATCATGAA TTTTATAATG TTATTTTGGA CACAAATAGC
  TCCTTCTCTG ATTTTCTCCT AATTGTACAT GTCCCTTAAA TATTAAGATC ATATTCTACA
  AACATCATGG ATATATTTTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63706513	NES17064439	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	T	A	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47480450					SNP	A	A	A	A	A	A	T	A	A	A	T	A	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63706513	NES17064439	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:27030612 () rs orientation: forward

Symbol	Name	Function Class
Rr391526	regulatory region 391526	142 bp upstream