rs47480470 SNP Detail

Summary

• ID
  rs47480470
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:66904144 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGAAG AAAGGAATCG ATGGGCAAAG
  A
  AACCTGTCTA ACTGGAAAGT TTATG                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss144520438	ENSMUSSNP2032082	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss319758761	CHEV_1_66911559	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs47480470					SNP	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:66904144 () rs orientation: forward

Symbol	Name	Function Class
Acadl	acyl-Coenzyme A dehydrogenase, long-chain	1708 bp upstream
Cpgi339	CpG island 339	1246 bp distal
Gm25832	predicted gene, 25832	1812 bp upstream
Rr412478	regulatory region 412478	1719 bp distal
Rr412479	regulatory region 412479	1218 bp distal
Rr412480	regulatory region 412480	747 bp proximal
Rr412481	regulatory region 412481	1855 bp proximal
Tssr12011	transcription start site region 12011	1726 bp upstream
Tssr12012	transcription start site region 12012	1700 bp upstream
Tssr12013	transcription start site region 12013	1688 bp upstream
Tssr12014	transcription start site region 12014	1670 bp upstream
Tssr12015	transcription start site region 12015	1650 bp upstream
Tssr12016	transcription start site region 12016	1635 bp upstream