rs47480773 SNP Detail

Summary

• ID
  rs47480773
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:24659938 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAAAAATTAA AGTAAAATAA AAAATAAGGA GCCTAACCAA
  TCAGGCTCCT ATTCCAGTGT TCAGCCCTGT GTGCTCCCTG CAGTAGACTT CTCCATCTGC
  Y
  TAACCATATT GGCCTGTTCT ACAGGGCAGG GCTCCCACCT TGTCCAGCGA AGGGTGATAA
  CACATCTTGA TCTTTTCTGT GTGAAGCCCA GCAGATGTA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss148093851	ENSMUSSNP2288606	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs47480773					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:24659938 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Agap3	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3			Intron
				Noncoding-Transcript-Variant
Cpgi15603	CpG island 15603			1622 bp distal
Rr608325	regulatory region 608325			1826 bp distal
Rr608326	regulatory region 608326			1355 bp distal