rs47482107 SNP Detail

Summary

• ID
  rs47482107
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:77969383 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCAATGTAT TATACTATTT
  CTATATCTGA AGGTACCTTA GGGGTTGAAA TTTCACAGGA GAATTAGCTA CTCGGAACTT
  GTTCAGTAGT TCTTGATCTT GGGTGTTTTT TCTGTTTTTA ACTCTAACAT GCTTAATAAA
  CACAGATTGT AATTTTTGAA TTAATAGCAT GTGCATCAAA AATATCAGTG CACGTGTTAT
  Y
  TCCATGAGGA CTTCCCGTGG TGACGGCGAC TCTCTGTTAT GTTTTTCTTG ACCAAAAACA
  CTCCTAAGCT GGTATGAGTA GGTCATTCAA AGGAAATTTC TGTGCTACTT TCTTTCAGAA
  AAGAAAGCTT TCCTCAGCTA CTGCTTCTGT GACATGATGT GAGATCCAGA GAGCAGCAGT
  CCATAACCAA ATCGCGTCGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63192717	NES17468825	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47482107					SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63192717	NES17468825	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:77969383 () rs orientation: forward

Symbol	Name	Function Class
Gm58860	predicted gene, 58860	1876 bp downstream
Pstpip2	proline-serine-threonine phosphatase-interacting protein 2	within coordinates
Rr541209	regulatory region 541209	1443 bp distal
Rr541210	regulatory region 541210	1339 bp proximal
Tssr152066	transcription start site region 152066	505 bp upstream
Tssr152067	transcription start site region 152067	537 bp upstream
Tssr152068	transcription start site region 152068	567 bp upstream
Tssr152069	transcription start site region 152069	668 bp upstream
Tssr152070	transcription start site region 152070	783 bp upstream
Tssr152071	transcription start site region 152071	814 bp upstream
Tssr152072	transcription start site region 152072	835 bp upstream
Tssr152073	transcription start site region 152073	868 bp upstream
Tssr152074	transcription start site region 152074	897 bp upstream
Tssr152075	transcription start site region 152075	917 bp upstream