rs47482125 SNP Detail

Summary

• ID
  rs47482125
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:143606832 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T TGGGAGGGCA CACATGCAAC GTTAAGGAGA AGTTACTGGA
  AACGAGACAT ACGGAATGAG AAAATCGAGC CATAGATTTG GAACAGGGGA GTACTGAGTC
  Y
  GTCTGCCCAG CCCTGGGCTG TGCCCACGGG AAATTGAATT CAGAGCTCCT ACTGCATCAT
  AAATCCAGGG CAGCTGGCAG CAAGCCAAGG GAGACTAACG C                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss144601672	ENSMUSSNP4561655	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs47482125					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:143606832 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16995	CpG island 16995	1097 bp proximal
Cyth3	cytohesin 3	1370 bp upstream
Gm73103	predicted gene, 73103	within coordinates
Rr124733	regulatory region 124733	968 bp proximal
Tssr49666	transcription start site region 49666	1363 bp upstream
Tssr49667	transcription start site region 49667	1389 bp upstream
Tssr49668	transcription start site region 49668	1478 bp upstream