rs47485121 SNP Detail

Summary

• ID
  rs47485121
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:145734553 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTGTAGTG GCACTGTTAG
  GAGGTGTGGC TTTGTTGGAG TGAGTGTGGC CTTGTTGGAG GAAGTATGTC ACTGCAGGTG
  GGCTTTAAGG CTTCAGAAGT TGAAGCCAGT CCCAGTGTCA TTCTCTCTTC ATGCTACCTG
  CCAATCCAGA CGTAGAACTC TCAGCTGCTG GTCTGCACCA TGGCTGCCTG TGCACCACCA
  Y
  GCTTCCTGCC ATGACAATAA TGGACTAAAC CTCTTTACTG TAAGTCAACC CTAGTTAAAT
  GCTTTCCTTT AAAAGTTGTT GTGGTCCTGG ATGCTCTTCA TAGAAACAGA ACACTGACTA
  AGACAGCAGA TAAAGGCACT TGGTTGCTCA GTTTGATCCC TGGGACATAC ATGGTGGAGG
  GGAAGAACTG GCTCCTGTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61096120	NES16611383	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47485121					SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61096120	NES16611383	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:145734553 () rs orientation: forward

Symbol	Name	Function Class
Gm40166	predicted gene, 40166	within coordinates
Rr586905	regulatory region 586905	1029 bp distal
Rr586906	regulatory region 586906	503 bp proximal
Rr586907	regulatory region 586907	1601 bp proximal
Rr586908	regulatory region 586908	1895 bp proximal