rs47485647 SNP Detail

Summary

• ID
  rs47485647
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:3309303 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGACAAAATC AGCCCATGAA
  CCCCATGGAA GCCAACCCCA ACTGAAGCTG AGATAATCAG ACCAGGAAGT GAAAATGACA
  TTCAAACTAA ATTATTTAAA ACAAGGCATA CCTCTCCCCA ACTCAGTCTA AAGACACAAT
  TTCATTTTGA GAATGTTTAC AGCCCATTTA ATTAATCAGT GAACTAAAAG TCATAGAAAT
  K
  GGATTTGTGC AAATGTAGAG AAATCTACCA TATTGGCTTC CAAAATTTAA AAATTTTATG
  CCACAGAACA TTTCATCCAA ATCAGATTTG TACAATAGGG CACCTGAAAA GTGACTGCAG
  CCTTTGGTTA ATATGTCTTT CTTTTTCCTT TTTCCAGTGT TCTAGTTACA TTAATGAGAA
  CAGAAACATA AACTATGACC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62609617	NES17307818	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	G	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47485647					SNP	T	T	T	T	T	T	T	T	G	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62609617	NES17307818	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:3309303 () rs orientation: forward

Symbol	Name	Function Class
Ccdc152	coiled-coil domain containing 152	249 bp downstream
Rr498566	regulatory region 498566	1478 bp proximal
Selenop	selenoprotein P	within coordinates
Tssr4538	transcription start site region 4538	561 bp downstream
Tssr130397	transcription start site region 130397	691 bp downstream
Tssr130398	transcription start site region 130398	638 bp downstream
Tssr130399	transcription start site region 130399	549 bp downstream
Tssr130400	transcription start site region 130400	525 bp downstream
Tssr130401	transcription start site region 130401	517 bp downstream
Tssr130402	transcription start site region 130402	453 bp downstream
Tssr130403	transcription start site region 130403	406 bp downstream
Tssr130404	transcription start site region 130404	364 bp downstream
Tssr130405	transcription start site region 130405	346 bp downstream
Tssr130406	transcription start site region 130406	320 bp downstream
Tssr130407	transcription start site region 130407	284 bp downstream
Tssr130408	transcription start site region 130408	254 bp downstream
Tssr130409	transcription start site region 130409	237 bp downstream
Tssr130410	transcription start site region 130410	211 bp downstream
Tssr130411	transcription start site region 130411	163 bp downstream
Tssr130412	transcription start site region 130412	82 bp downstream
Tssr130413	transcription start site region 130413	153 bp upstream
Tssr130414	transcription start site region 130414	201 bp upstream
Tssr130415	transcription start site region 130415	275 bp upstream
Tssr130416	transcription start site region 130416	572 bp upstream
Tssr133563	transcription start site region 133563	584 bp upstream
Tssr133564	transcription start site region 133564	553 bp upstream
Tssr133565	transcription start site region 133565	509 bp upstream
Tssr133566	transcription start site region 133566	497 bp upstream
Tssr133567	transcription start site region 133567	246 bp upstream
Tssr133568	transcription start site region 133568	119 bp upstream