rs47485798 SNP Detail

Summary

• ID
  rs47485798
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:25401796 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTCC TGGGTTGGGC CTCTTAGTGT
  G
  TGGGGCGGGG GGAACCTCAC AGGTG                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145380152	ENSMUSSNP517075	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47485798					SNP	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:25401796 () rs orientation: forward

Symbol	Name	Function Class
4930568E02Rik	RIKEN cDNA 4930568E02 gene	791 bp downstream
Cpgi8755	CpG island 8755	1181 bp proximal
Rr370183	regulatory region 370183	1518 bp upstream
Rr523507	regulatory region 523507	478 bp proximal
Rr523508	regulatory region 523508	585 bp proximal
Rr523509	regulatory region 523509	1242 bp proximal
Tssr5037	transcription start site region 5037	1736 bp upstream
Tssr143142	transcription start site region 143142	1742 bp upstream
Tssr143143	transcription start site region 143143	1788 bp upstream
Tssr146818	transcription start site region 146818	1560 bp downstream
Tssr146819	transcription start site region 146819	1582 bp downstream
Uqcc4	ubiquinol-cytochrome c reductase complex assembly factor 4	1739 bp upstream