rs47485878 SNP Detail

Summary

• ID
  rs47485878
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:17668614 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A AAGGGGGAAG CTATAAAGGG TCTATAATGC TCCCCTACAA
  TAACCTTAAA CAAAGGAGAA AATAACAGGC AAAAAGAATG GCAGAAGAGA AAATCCACGC
  M
  ATTAAAAACA TATAGACCTA TGTGTGAGTA CCTATCACTT TACATCTGTG AGCTTGCCTG
  TGTTGAAATT CATTTTGACA ACTAAATAAA AAGAATAGTG T                    
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145221657	ENSMUSSNP3930188	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47485878					SNP	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:17668614 () rs orientation: forward

Symbol	Name	Function Class
Lix1	limb and CNS expressed 1	within coordinates
Rr392356	regulatory region 392356	109 bp upstream
Rr522858	regulatory region 522858	188 bp proximal
Tssr142793	transcription start site region 142793	508 bp upstream
Tssr142794	transcription start site region 142794	542 bp upstream