rs47486207 SNP Detail

Summary

• ID
  rs47486207
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:31183950 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTTG CTTCTAGTTT GTGTAACCTC
  K
  CTGCCCACCA TTGAGAGGGG GAAAT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss146401673	ENSMUSSNP6849968	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss320221792	CHEV_2_31149458	CHEVERUD	SCREENING_POP	f	SNP			T	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs47486207					SNP	G	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:31183950 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ncs1	neuronal calcium sensor 1			mRNA-UTR
				Noncoding-Transcript-Variant
Rr554600	regulatory region 554600			981 bp proximal
Rr554601	regulatory region 554601			1226 bp proximal
Tssr17179	transcription start site region 17179			744 bp downstream