rs47486931 SNP Detail

Summary

• ID
  rs47486931
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:115470697 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAGGACGG GTACCCACCT
  CCGTGTGACA GTGAACGTTG AGGGAGGTGA CAATGCCAGG CACACAGTGA GTGCCAGGGC
  TGGGCTTTGC TCGTGCCTCT GGGTCTTCAC TCTTCCCTTC TGTTTGTTTG GATTTCAGGG
  TGAGACTTCC TACATCCGAG TGTATCCTGA GAGAAGCACC AGCTATGGCT ACTCACGGTC
  R
  CGGTCTGGGT CCAGGGGCCG CGACTCGCCA TACCAAAGCC GGGGCTCGCC ACACTACTTC
  TCTCCTTTCA GGCCCTACTG AGGGGGTGGG AAGGAAGGGT CTCTTCAGTT TTTTAGATGA
  GCTGGGCTAC TTTGTGCTCA GAGTCTACAT TCCAGATTGA TTAGAGTCTT AGGACATTTT
  TTTTCTTTTC TTTCCTTTTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60829334	NES16021082	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47486931					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60829334	NES16021082	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:115470697 () rs orientation: forward

Symbol	Name	Function Class
Gatc	glutamyl-tRNA amidotransferase subunit C	604 bp downstream
Rr618222	regulatory region 618222	1298 bp distal
Rr618223	regulatory region 618223	855 bp proximal
Srsf9	serine and arginine-rich splicing factor 9	within coordinates
Tssr48220	transcription start site region 48220	83 bp upstream
Tssr48221	transcription start site region 48221	220 bp upstream
Tssr52783	transcription start site region 52783	1391 bp downstream
Tssr52784	transcription start site region 52784	1430 bp downstream
Tssr52785	transcription start site region 52785	1460 bp downstream
Tssr52786	transcription start site region 52786	1586 bp downstream
Tssr52787	transcription start site region 52787	1631 bp downstream
Tssr52788	transcription start site region 52788	1841 bp downstream
Tssr52789	transcription start site region 52789	1878 bp downstream